chr18-72794161-C-A
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_138966.5(NETO1):c.595G>T(p.Ala199Ser) variant causes a missense change involving the alteration of a conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_138966.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
NETO1 | ENST00000327305.11 | c.595G>T | p.Ala199Ser | missense_variant | Exon 6 of 11 | 1 | NM_138966.5 | ENSP00000313088.6 | ||
NETO1 | ENST00000583169.5 | c.595G>T | p.Ala199Ser | missense_variant | Exon 6 of 11 | 1 | ENSP00000464312.1 | |||
NETO1 | ENST00000579730.2 | n.303-10255G>T | intron_variant | Intron 3 of 3 | 5 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.595G>T (p.A199S) alteration is located in exon 6 (coding exon 6) of the NETO1 gene. This alteration results from a G to T substitution at nucleotide position 595, causing the alanine (A) at amino acid position 199 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.