chr19-57253079-A-G
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001023563.4(ZNF805):āc.260A>Gā(p.Lys87Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000763 in 1,441,022 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001023563.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ZNF805 | NM_001023563.4 | c.260A>G | p.Lys87Arg | missense_variant | 4/4 | ENST00000414468.3 | |
ZNF805 | NM_001145078.2 | c.-140A>G | 5_prime_UTR_variant | 3/3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ZNF805 | ENST00000414468.3 | c.260A>G | p.Lys87Arg | missense_variant | 4/4 | 5 | NM_001023563.4 | P1 | |
ZNF805 | ENST00000354309.4 | c.-140A>G | 5_prime_UTR_variant | 3/3 | 5 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152196Hom.: 0 Cov.: 33
GnomAD4 exome AF: 0.00000776 AC: 10AN: 1288826Hom.: 0 Cov.: 29 AF XY: 0.00000641 AC XY: 4AN XY: 623950
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152196Hom.: 0 Cov.: 33 AF XY: 0.00 AC XY: 0AN XY: 74356
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | May 30, 2023 | The c.260A>G (p.K87R) alteration is located in exon 4 (coding exon 4) of the ZNF805 gene. This alteration results from a A to G substitution at nucleotide position 260, causing the lysine (K) at amino acid position 87 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at