chr2-241190138-G-C
Variant summary
Our verdict is Likely benign. Variant got -6 ACMG points: 0P and 6B. BP4_StrongBP6_Moderate
The NM_001370694.2(ANO7):āc.75G>Cā(p.Arg25Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000193 in 1,573,580 control chromosomes in the GnomAD database, including 2 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (ā ).
Frequency
Consequence
NM_001370694.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -6 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ANO7 | NM_001370694.2 | c.75G>C | p.Arg25Ser | missense_variant | 2/25 | ENST00000674324.2 | NP_001357623.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ANO7 | ENST00000674324.2 | c.75G>C | p.Arg25Ser | missense_variant | 2/25 | NM_001370694.2 | ENSP00000501393 | A2 | ||
ANO7 | ENST00000274979.12 | c.237G>C | p.Arg79Ser | missense_variant | 2/25 | 1 | ENSP00000274979 | P2 | ||
ANO7 | ENST00000402530.8 | c.75G>C | p.Arg25Ser | missense_variant | 2/4 | 1 | ENSP00000383985 | |||
ANO7 | ENST00000402430.8 | c.75G>C | p.Arg25Ser | missense_variant | 2/22 | 5 | ENSP00000385418 |
Frequencies
GnomAD3 genomes AF: 0.00108 AC: 164AN: 152142Hom.: 1 Cov.: 33
GnomAD3 exomes AF: 0.000260 AC: 48AN: 184456Hom.: 0 AF XY: 0.000213 AC XY: 21AN XY: 98578
GnomAD4 exome AF: 0.0000978 AC: 139AN: 1421320Hom.: 1 Cov.: 31 AF XY: 0.0000896 AC XY: 63AN XY: 703122
GnomAD4 genome AF: 0.00108 AC: 164AN: 152260Hom.: 1 Cov.: 33 AF XY: 0.00111 AC XY: 83AN XY: 74444
ClinVar
Submissions by phenotype
not provided Benign:1
Likely benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Dec 31, 2019 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at