chr22-24220041-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_004121.5(GGT5):c.1690G>A(p.Val564Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004121.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
GGT5 | ENST00000327365.10 | c.1690G>A | p.Val564Met | missense_variant | Exon 12 of 12 | 1 | NM_004121.5 | ENSP00000330080.4 | ||
GGT5 | ENST00000398292.3 | c.1693G>A | p.Val565Met | missense_variant | Exon 12 of 12 | 1 | ENSP00000381340.3 | |||
GGT5 | ENST00000263112.11 | c.1594G>A | p.Val532Met | missense_variant | Exon 11 of 11 | 1 | ENSP00000263112.7 | |||
GGT5 | ENST00000425408.5 | c.589G>A | p.Val197Met | missense_variant | Exon 6 of 6 | 5 | ENSP00000402917.1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1690G>A (p.V564M) alteration is located in exon 12 (coding exon 12) of the GGT5 gene. This alteration results from a G to A substitution at nucleotide position 1690, causing the valine (V) at amino acid position 564 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.