chr8-11543171-G-A
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_001715.3(BLK):c.-1-53G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.456 in 1,610,296 control chromosomes in the GnomAD database, including 176,966 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_001715.3 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
BLK | ENST00000259089.9 | c.-1-53G>A | intron_variant | Intron 1 of 12 | 1 | NM_001715.3 | ENSP00000259089.4 | |||
BLK | ENST00000645242.1 | n.275-2881G>A | intron_variant | Intron 1 of 11 | ||||||
BLK | ENST00000696154.2 | n.275-2881G>A | intron_variant | Intron 1 of 11 |
Frequencies
GnomAD3 genomes AF: 0.411 AC: 62361AN: 151882Hom.: 13808 Cov.: 31
GnomAD4 exome AF: 0.460 AC: 671426AN: 1458296Hom.: 163156 AF XY: 0.458 AC XY: 332016AN XY: 725480
GnomAD4 genome AF: 0.410 AC: 62367AN: 152000Hom.: 13810 Cov.: 31 AF XY: 0.397 AC XY: 29509AN XY: 74302
ClinVar
Submissions by phenotype
not provided Benign:2
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Maturity-onset diabetes of the young type 11 Benign:1
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Systemic lupus erythematosus Benign:1
BLK gene is associated with Systemic lupus erythematosus, sjogren's syndrome and other systemic inflammatory conditions. However no sufficient evidence is found to ascertain the role of this particular variant rs2245250, yet. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at