chr8-132572315-C-T
Variant summary
Our verdict is Benign. Variant got -7 ACMG points: 0P and 7B. BP4_StrongBP6_ModerateBP7
The NM_012472.6(DNAAF11):c.1392G>A(p.Pro464=) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000813 in 1,611,732 control chromosomes in the GnomAD database, including 2 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Synonymous variant affecting the same amino acid position (i.e. P464P) has been classified as Benign.
Frequency
Consequence
NM_012472.6 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -7 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DNAAF11 | NM_012472.6 | c.1392G>A | p.Pro464= | synonymous_variant | 12/12 | ENST00000620350.5 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DNAAF11 | ENST00000620350.5 | c.1392G>A | p.Pro464= | synonymous_variant | 12/12 | 1 | NM_012472.6 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0000986 AC: 15AN: 152118Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000193 AC: 48AN: 248694Hom.: 0 AF XY: 0.000223 AC XY: 30AN XY: 134384
GnomAD4 exome AF: 0.0000795 AC: 116AN: 1459496Hom.: 2 Cov.: 31 AF XY: 0.0000978 AC XY: 71AN XY: 726046
GnomAD4 genome ? AF: 0.0000985 AC: 15AN: 152236Hom.: 0 Cov.: 32 AF XY: 0.0000940 AC XY: 7AN XY: 74432
ClinVar
Submissions by phenotype
Primary ciliary dyskinesia 19 Benign:1
Benign, criteria provided, single submitter | clinical testing | Invitae | Mar 19, 2023 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at