rs10487075
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000333190.5(ZNF804B):c.2725G>A(p.Glu909Lys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0959 in 1,613,950 control chromosomes in the GnomAD database, including 8,100 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
ENST00000333190.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ZNF804B | NM_181646.5 | c.2725G>A | p.Glu909Lys | missense_variant | 4/4 | ENST00000333190.5 | NP_857597.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZNF804B | ENST00000333190.5 | c.2725G>A | p.Glu909Lys | missense_variant | 4/4 | 1 | NM_181646.5 | ENSP00000329638 | P1 | |
ZNF804B | ENST00000611114.1 | c.2476G>A | p.Glu826Lys | missense_variant | 3/3 | 5 | ENSP00000478506 |
Frequencies
GnomAD3 genomes AF: 0.0745 AC: 11326AN: 152066Hom.: 550 Cov.: 32
GnomAD3 exomes AF: 0.0819 AC: 20570AN: 251288Hom.: 987 AF XY: 0.0836 AC XY: 11350AN XY: 135804
GnomAD4 exome AF: 0.0982 AC: 143476AN: 1461766Hom.: 7549 Cov.: 38 AF XY: 0.0969 AC XY: 70486AN XY: 727186
GnomAD4 genome AF: 0.0744 AC: 11330AN: 152184Hom.: 551 Cov.: 32 AF XY: 0.0742 AC XY: 5522AN XY: 74388
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at