rs1048886
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_145267.3(SDHAF4):āc.137A>Gā(p.Gln46Arg) variant causes a missense change. The variant allele was found at a frequency of 0.177 in 1,609,918 control chromosomes in the GnomAD database, including 26,366 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_145267.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SDHAF4 | NM_145267.3 | c.137A>G | p.Gln46Arg | missense_variant | 2/3 | ENST00000370474.4 | NP_660310.2 | |
SDHAF4 | XM_047418210.1 | c.137A>G | p.Gln46Arg | missense_variant | 2/3 | XP_047274166.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SDHAF4 | ENST00000370474.4 | c.137A>G | p.Gln46Arg | missense_variant | 2/3 | 1 | NM_145267.3 | ENSP00000359505 | P1 |
Frequencies
GnomAD3 genomes AF: 0.212 AC: 32207AN: 152036Hom.: 3778 Cov.: 32
GnomAD3 exomes AF: 0.178 AC: 44368AN: 249110Hom.: 4304 AF XY: 0.174 AC XY: 23448AN XY: 134846
GnomAD4 exome AF: 0.173 AC: 252019AN: 1457764Hom.: 22566 Cov.: 31 AF XY: 0.172 AC XY: 124749AN XY: 725258
GnomAD4 genome AF: 0.212 AC: 32278AN: 152154Hom.: 3800 Cov.: 32 AF XY: 0.212 AC XY: 15806AN XY: 74386
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at