rs10521608
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_ModerateBA1
The NM_015691.5(WWC3):c.593-3508C>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0167 in 112,307 control chromosomes in the GnomAD database, including 39 homozygotes. There are 668 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_015691.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
WWC3 | NM_015691.5 | c.593-3508C>A | intron_variant | NP_056506.3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
WWC3 | ENST00000380861.10 | c.593-3508C>A | intron_variant | 1 | ENSP00000370242 | P1 |
Frequencies
GnomAD3 genomes AF: 0.0167 AC: 1873AN: 112250Hom.: 40 Cov.: 23 AF XY: 0.0194 AC XY: 667AN XY: 34430
GnomAD4 genome AF: 0.0167 AC: 1875AN: 112307Hom.: 39 Cov.: 23 AF XY: 0.0194 AC XY: 668AN XY: 34497
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at