rs10952296

Variant names:

• chr7-150987742-C-A
• rs10952296

Your query was ambiguous. Multiple possible variants found:

• chr7-150987742-C-A
• chr7-150987742-C-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.336 in 151,732 control chromosomes in the GnomAD database, including 9,706 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.34 (9706 hom., cov: 30)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.623

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.9).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.731 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.336 AC: 50976 AN: 151614 Hom.: 9676 Cov.: 30

Gnomad AFR AF: 0.438

Gnomad AMI AF: 0.259

Gnomad AMR AF: 0.367

Gnomad ASJ AF: 0.313

Gnomad EAS AF: 0.751

Gnomad SAS AF: 0.452

Gnomad FIN AF: 0.300

Gnomad MID AF: 0.323

Gnomad NFE AF: 0.237

Gnomad OTH AF: 0.315

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.336 AC: 51050 AN: 151732 Hom.: 9706 Cov.: 30 AF XY: 0.345 AC XY: 25555 AN XY: 74140

Gnomad4 AFR AF: 0.438

Gnomad4 AMR AF: 0.367

Gnomad4 ASJ AF: 0.313

Gnomad4 EAS AF: 0.750

Gnomad4 SAS AF: 0.452

Gnomad4 FIN AF: 0.300

Gnomad4 NFE AF: 0.237

Gnomad4 OTH AF: 0.324

Alfa AF: 0.281 Hom.: 1706

Bravo AF: 0.350

Asia WGS AF: 0.588 AC: 2039 AN: 3476

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.90
CADD	Benign	5.8
DANN	Benign	0.69

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs10952296; hg19: chr7-150684830;