rs11067228

Variant names:

• chr12-114656455-A-G
• rs11067228

Variant summary

Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4 BA1

The variant allele was found at a frequency of 0.375 in 152,056 control chromosomes in the GnomAD database, including 12,050 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.38 (12050 hom., cov: 32)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 1.49

ACMG classification

Verdict is Benign. Variant got -9 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.18).
• BA1: GnomAd4 highest subpopulation (AMR) allele frequency at 95% confidence interval = 0.502 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.375 AC: 57025 AN: 151938 Hom.: 12026 Cov.: 32

Gnomad AFR AF: 0.167

Gnomad AMI AF: 0.611

Gnomad AMR AF: 0.511

Gnomad ASJ AF: 0.486

Gnomad EAS AF: 0.463

Gnomad SAS AF: 0.429

Gnomad FIN AF: 0.389

Gnomad MID AF: 0.361

Gnomad NFE AF: 0.449

Gnomad OTH AF: 0.407

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.375 AC: 57078 AN: 152056 Hom.: 12050 Cov.: 32 AF XY: 0.379 AC XY: 28188 AN XY: 74328

Gnomad4 AFR AF: 0.168

Gnomad4 AMR AF: 0.512

Gnomad4 ASJ AF: 0.486

Gnomad4 EAS AF: 0.463

Gnomad4 SAS AF: 0.431

Gnomad4 FIN AF: 0.389

Gnomad4 NFE AF: 0.449

Gnomad4 OTH AF: 0.412

Alfa AF: 0.443 Hom.: 24885

Bravo AF: 0.378

Asia WGS AF: 0.442 AC: 1539 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.18
CADD	Benign	17
DANN	Benign	0.86

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs11067228; hg19: chr12-115094260;