rs111340708
Variant summary
Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.
The ENST00000341259.7(SH2B3):c.1236+4_1236+18delTGGGGTGGGGTGGGG variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000221 in 587,712 control chromosomes in the GnomAD database, including 1 homozygotes. It is difficult to determine the true allele frequency of this variant because it is of type DEL_BIG, and the frequency of such variant types in population databases may be underestimated and unreliable. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000341259.7 splice_region, intron
Scores
Clinical Significance
Conservation
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ACMG classification
Our verdict: Uncertain_significance. The variant received 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SH2B3 | ENST00000341259.7 | c.1236+4_1236+18delTGGGGTGGGGTGGGG | splice_region_variant, intron_variant | Intron 6 of 7 | 1 | NM_005475.3 | ENSP00000345492.2 | |||
SH2B3 | ENST00000538307.1 | c.630+4_630+18delTGGGGTGGGGTGGGG | splice_region_variant, intron_variant | Intron 5 of 6 | 2 | ENSP00000440597.1 | ||||
ATXN2 | ENST00000642389.2 | n.*171-3375_*171-3361delCCCCACCCCACCCCA | intron_variant | Intron 26 of 26 | ENSP00000496055.2 |
Frequencies
GnomAD3 genomes AF: 0.0000335 AC: 3AN: 89446Hom.: 0 Cov.: 0 show subpopulations
GnomAD2 exomes AF: 0.0000162 AC: 3AN: 184788 AF XY: 0.00000965 show subpopulations
GnomAD4 exome AF: 0.0000201 AC: 10AN: 498266Hom.: 1 AF XY: 0.0000191 AC XY: 5AN XY: 261132 show subpopulations
GnomAD4 genome AF: 0.0000335 AC: 3AN: 89446Hom.: 0 Cov.: 0 AF XY: 0.00 AC XY: 0AN XY: 42374 show subpopulations
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at