rs11467214
chr20-37179387-G-GCTTACAAACAGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTACAGACAGGGCCCCGCGGCCGACACTchr20-37179387-G-GCTTACAGACAGGGCCCCGCGGCCGGAACTchr20-37179387-G-GCTTACAGACAGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTACAGACAGGGCCCGCGGCCGGCACTchr20-37179387-G-GCTTATACACAGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTATAGACAchr20-37179387-G-GCTTATAGACAGGCCCCCGCGGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGCAGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGCGGCCAGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGCGGCCGGCATTchr20-37179387-G-GCTTATAGACAGGGCCCCGCGGCGGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGCGGTCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCCGTGGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCGCGGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCGGCGGCCGGCACTchr20-37179387-G-GCTTATAGACAGGGCCCTGCGGCCGGCACTchr20-37179387-G-GCTTATAGACGGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTATchr20-37179387-G-GCTTATGGACAGGGCCCCGCGGCCGGCACTchr20-37179387-G-GCTTGTAGACAGGGCCCCGCGGCCGGCACT
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PM4
The NM_152503.8(MROH8):c.92+1_93insAGTGCCGGCCGCGGGGCCCTGTTTGTAAG(p.Asn31LysfsTer10) variant causes a splice donor, stop gained, frameshift change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: not found (cov: 0)
Consequence
MROH8
NM_152503.8 splice_donor, stop_gained, frameshift
NM_152503.8 splice_donor, stop_gained, frameshift
Scores
Not classified
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: 0.659
Genes affected
MROH8 (HGNC:16125): (maestro heat like repeat family member 8) The protein encoded by this gene belongs to the maestro heat-like repeat family. The exact function of this gene is not known, however, in a genome-wide association study using hippocampal atrophy as a quantitative trait, this gene has been associated with Alzheimer's disease (PMID:19668339). Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]
RPN2 (HGNC:10382): (ribophorin II) This gene encodes a type I integral membrane protein found only in the rough endoplasmic reticulum. The encoded protein is part of an N-oligosaccharyl transferase complex that links high mannose oligosaccharides to asparagine residues found in the Asn-X-Ser/Thr consensus motif of nascent polypeptide chains. This protein is similar in sequence to the yeast oligosaccharyl transferase subunit SWP1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
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ACMG classification
Classification made for transcript
Verdict is Uncertain_significance. Variant got 4 ACMG points.
PM2
?
Very rare variant in population databases, with high coverage;
PM4
?
Stoplost variant in NM_152503.8 Downstream stopcodon found after 781 codons.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
MROH8 | NM_152503.8 | c.92+1_93insAGTGCCGGCCGCGGGGCCCTGTTTGTAAG | p.Asn31LysfsTer10 | splice_donor_variant, stop_gained, frameshift_variant | ENST00000710289.2 | ||
RPN2 | NM_002951.5 | c.13+21_13+22insACAAACAGGGCCCCGCGGCCGGCACTCTT | intron_variant | ENST00000237530.11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
MROH8 | ENST00000343811.10 | c.92+1_93insAGTGCCGGCCGCGGGGCCCTGTTTGTAAG | p.Asn31LysfsTer10 | splice_donor_variant, stop_gained, frameshift_variant | 1 | P2 | |||
RPN2 | ENST00000237530.11 | c.13+21_13+22insACAAACAGGGCCCCGCGGCCGGCACTCTT | intron_variant | 1 | NM_002951.5 | P1 |
Frequencies
GnomAD3 genomes ? Cov.: 0
GnomAD3 genomes
?
Cov.:
0
GnomAD4 exome Cov.: 83
GnomAD4 exome
Cov.:
83
GnomAD4 genome ? Cov.: 0
GnomAD4 genome
?
Cov.:
0
ClinVar
Not reported inComputational scores
Source:
Name
Calibrated prediction
Score
Prediction
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at