rs11858145
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_001103184.4(FMN1):c.512G>T(p.Gly171Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.658 in 1,613,658 control chromosomes in the GnomAD database, including 352,234 homozygotes. In-silico tool predicts a benign outcome for this variant. 10/14 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_001103184.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.653 AC: 99167AN: 151864Hom.: 32774 Cov.: 31
GnomAD3 exomes AF: 0.701 AC: 174559AN: 249028Hom.: 62257 AF XY: 0.701 AC XY: 94746AN XY: 135074
GnomAD4 exome AF: 0.658 AC: 961820AN: 1461676Hom.: 319433 Cov.: 68 AF XY: 0.661 AC XY: 480754AN XY: 727122
GnomAD4 genome AF: 0.653 AC: 99246AN: 151982Hom.: 32801 Cov.: 31 AF XY: 0.661 AC XY: 49067AN XY: 74262
ClinVar
Submissions by phenotype
not provided Benign:3
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Feb 03, 2025 | - - |
Benign, criteria provided, single submitter | clinical testing | GeneDx | May 04, 2021 | - - |
Benign, criteria provided, single submitter | not provided | Breakthrough Genomics, Breakthrough Genomics | - | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at