rs11991767

Variant names:

• chr8-21174637-G-A
• rs11991767
• ENST00000657734.1:n.1327-114702C>T

Your query was ambiguous. Multiple possible variants found:

• chr8-21174637-G-A
• chr8-21174637-G-C

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The ENST00000657734.1(ENSG00000254092):​n.1327-114702C>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.332 in 151,978 control chromosomes in the GnomAD database, including 8,515 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.33 (8515 hom., cov: 32)
• Consequence: ENSG00000254092 ENST00000657734.1 intron
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.138

Genes affected

ENSG00000254092 (HGNC:):

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.91).
• BA1: GnomAd4 highest subpopulation (SAS) allele frequency at 95% confidence interval = 0.417 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt
ENSG00000254092	ENST00000657734.1	n.1327-114702C>T		intron_variant	Intron 2 of 4
ENSG00000254092	ENST00000659453.1	n.1640-114702C>T		intron_variant	Intron 2 of 3

Frequencies

GnomAD3 genomes AF: 0.332 AC: 50384 AN: 151860 Hom.: 8508 Cov.: 32

Gnomad AFR AF: 0.362

Gnomad AMI AF: 0.227

Gnomad AMR AF: 0.263

Gnomad ASJ AF: 0.376

Gnomad EAS AF: 0.237

Gnomad SAS AF: 0.432

Gnomad FIN AF: 0.353

Gnomad MID AF: 0.402

Gnomad NFE AF: 0.324

Gnomad OTH AF: 0.350

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.332 AC: 50422 AN: 151978 Hom.: 8515 Cov.: 32 AF XY: 0.330 AC XY: 24548 AN XY: 74278

Gnomad4 AFR AF: 0.362

Gnomad4 AMR AF: 0.263

Gnomad4 ASJ AF: 0.376

Gnomad4 EAS AF: 0.237

Gnomad4 SAS AF: 0.432

Gnomad4 FIN AF: 0.353

Gnomad4 NFE AF: 0.324

Gnomad4 OTH AF: 0.350

Alfa AF: 0.324 Hom.: 16796

Bravo AF: 0.325

Asia WGS AF: 0.370 AC: 1285 AN: 3476

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.91
CADD	Benign	1.1
DANN	Benign	0.68

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs11991767; hg19: chr8-21032148;