rs121913136
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PP2PP5
The NM_000208.4(INSR):āc.1459A>Gā(p.Lys487Glu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000124 in 1,612,984 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Pathogenic (no stars). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. K487Q) has been classified as Uncertain significance.
Frequency
Consequence
NM_000208.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
INSR | NM_000208.4 | c.1459A>G | p.Lys487Glu | missense_variant | 6/22 | ENST00000302850.10 | |
INSR | NM_001079817.3 | c.1459A>G | p.Lys487Glu | missense_variant | 6/21 | ||
INSR | XM_011527988.3 | c.1459A>G | p.Lys487Glu | missense_variant | 6/22 | ||
INSR | XM_011527989.4 | c.1459A>G | p.Lys487Glu | missense_variant | 6/21 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
INSR | ENST00000302850.10 | c.1459A>G | p.Lys487Glu | missense_variant | 6/22 | 1 | NM_000208.4 | A2 | |
INSR | ENST00000341500.9 | c.1459A>G | p.Lys487Glu | missense_variant | 6/21 | 1 | P3 | ||
INSR | ENST00000598216.1 | n.1434A>G | non_coding_transcript_exon_variant | 6/10 | 1 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 152064Hom.: 0 Cov.: 31
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1460920Hom.: 0 Cov.: 32 AF XY: 0.00000138 AC XY: 1AN XY: 726798
GnomAD4 genome AF: 0.00000658 AC: 1AN: 152064Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 74264
ClinVar
Submissions by phenotype
Leprechaunism syndrome Pathogenic:1
Pathogenic, no assertion criteria provided | literature only | OMIM | May 06, 1988 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at