rs121917999
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The ENST00000370214.9(ABCD3):c.50G>A(p.Gly17Asp) variant causes a missense change. The variant allele was found at a frequency of 0.000000688 in 1,453,476 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (no stars). Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
ENST00000370214.9 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ABCD3 | NM_002858.4 | c.50G>A | p.Gly17Asp | missense_variant | 1/23 | ENST00000370214.9 | NP_002849.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ABCD3 | ENST00000370214.9 | c.50G>A | p.Gly17Asp | missense_variant | 1/23 | 1 | NM_002858.4 | ENSP00000359233 | P3 | |
ABCD3 | ENST00000315713.5 | c.50G>A | p.Gly17Asp | missense_variant | 1/9 | 1 | ENSP00000326880 | |||
ABCD3 | ENST00000647998.2 | c.50G>A | p.Gly17Asp | missense_variant | 1/23 | ENSP00000497921 | A1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 6.88e-7 AC: 1AN: 1453476Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 723480
GnomAD4 genome Cov.: 33
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, no assertion criteria provided | literature only | OMIM | Jan 01, 1999 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at