rs12331141
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The ENST00000332644.6(TMPRSS11B):c.724A>T(p.Ile242Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. I242V) has been classified as Likely benign.
Frequency
Consequence
ENST00000332644.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TMPRSS11B | NM_182502.3 | c.724A>T | p.Ile242Phe | missense_variant | 8/10 | ENST00000332644.6 | NP_872308.2 | |
TMPRSS11B | XM_011531608.3 | c.724A>T | p.Ile242Phe | missense_variant | 8/11 | XP_011529910.1 | ||
TMPRSS11B | XM_011531609.1 | c.687-127A>T | intron_variant | XP_011529911.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TMPRSS11B | ENST00000332644.6 | c.724A>T | p.Ile242Phe | missense_variant | 8/10 | 1 | NM_182502.3 | ENSP00000330475 | P1 | |
TMPRSS11B | ENST00000510856.1 | n.200A>T | non_coding_transcript_exon_variant | 1/2 | 3 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 37
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at