rs12366
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_019896.4(POLE4):c.50G>A(p.Gly17Glu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000734 in 1,361,626 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. G17V) has been classified as Likely benign.
Frequency
Consequence
NM_019896.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
POLE4 | NM_019896.4 | c.50G>A | p.Gly17Glu | missense_variant | 1/4 | ENST00000483063.2 | |
LOC105374809 | XR_002959406.2 | n.148+3C>T | splice_donor_region_variant, intron_variant, non_coding_transcript_variant | ||||
LOC105374809 | XR_007087109.1 | n.148+3C>T | splice_donor_region_variant, intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
POLE4 | ENST00000483063.2 | c.50G>A | p.Gly17Glu | missense_variant | 1/4 | 1 | NM_019896.4 | P1 | |
POLE4 | ENST00000459636.5 | n.24G>A | non_coding_transcript_exon_variant | 1/4 | 3 | ||||
POLE4 | ENST00000485527.5 | n.25G>A | non_coding_transcript_exon_variant | 1/3 | 2 |
Frequencies
GnomAD3 genomes ? Cov.: 33
GnomAD3 exomes AF: 0.00000876 AC: 1AN: 114154Hom.: 0 AF XY: 0.0000160 AC XY: 1AN XY: 62528
GnomAD4 exome AF: 0.00000734 AC: 10AN: 1361626Hom.: 0 Cov.: 39 AF XY: 0.00000596 AC XY: 4AN XY: 671644
GnomAD4 genome ? Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at