rs12529
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_003739.6(AKR1C3):āc.15C>Gā(p.His5Gln) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.435 in 1,611,454 control chromosomes in the GnomAD database, including 162,669 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_003739.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
AKR1C3 | NM_003739.6 | c.15C>G | p.His5Gln | missense_variant | 1/9 | ENST00000380554.5 | |
AKR1C3 | NM_001253909.2 | c.15C>G | p.His5Gln | missense_variant | 1/3 | ||
AKR1C3 | NM_001253908.2 | c.85-1951C>G | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
AKR1C3 | ENST00000380554.5 | c.15C>G | p.His5Gln | missense_variant | 1/9 | 1 | NM_003739.6 | P4 |
Frequencies
GnomAD3 genomes AF: 0.456 AC: 69127AN: 151702Hom.: 16647 Cov.: 31
GnomAD3 exomes AF: 0.501 AC: 125720AN: 251128Hom.: 34101 AF XY: 0.501 AC XY: 68038AN XY: 135718
GnomAD4 exome AF: 0.433 AC: 632069AN: 1459634Hom.: 146005 Cov.: 36 AF XY: 0.439 AC XY: 318766AN XY: 726150
GnomAD4 genome AF: 0.456 AC: 69181AN: 151820Hom.: 16664 Cov.: 31 AF XY: 0.457 AC XY: 33914AN XY: 74184
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at