rs12689028
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000664306.2(STS):c.*84-14633T>C variant causes a intron, NMD transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.146 in 111,287 control chromosomes in the GnomAD database, including 1,523 homozygotes. There are 4,766 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000664306.2 intron, NMD_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
STS | ENST00000664306.2 | c.*84-14633T>C | intron_variant, NMD_transcript_variant | ENSP00000499549 |
Frequencies
GnomAD3 genomes AF: 0.146 AC: 16194AN: 111233Hom.: 1521 Cov.: 23 AF XY: 0.142 AC XY: 4751AN XY: 33511
GnomAD4 genome AF: 0.146 AC: 16212AN: 111287Hom.: 1523 Cov.: 23 AF XY: 0.142 AC XY: 4766AN XY: 33575
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at