rs12717
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000262193.7(PSMB1):āc.31C>Gā(p.Pro11Ala) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.407 in 1,611,798 control chromosomes in the GnomAD database, including 138,280 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
ENST00000262193.7 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PSMB1 | NM_002793.4 | c.31C>G | p.Pro11Ala | missense_variant | 1/6 | ENST00000262193.7 | NP_002784.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
PSMB1 | ENST00000262193.7 | c.31C>G | p.Pro11Ala | missense_variant | 1/6 | 1 | NM_002793.4 | ENSP00000262193 | P1 |
Frequencies
GnomAD3 genomes AF: 0.382 AC: 58105AN: 152032Hom.: 11787 Cov.: 34
GnomAD3 exomes AF: 0.416 AC: 103433AN: 248614Hom.: 22947 AF XY: 0.417 AC XY: 56112AN XY: 134438
GnomAD4 exome AF: 0.410 AC: 598504AN: 1459648Hom.: 126471 Cov.: 39 AF XY: 0.410 AC XY: 297685AN XY: 726096
GnomAD4 genome AF: 0.382 AC: 58170AN: 152150Hom.: 11809 Cov.: 34 AF XY: 0.387 AC XY: 28755AN XY: 74364
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at