rs12742923
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NR_147074.1(LINC01362):n.1056+26572C>T variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.129 in 152,170 control chromosomes in the GnomAD database, including 1,447 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NR_147074.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LINC01362 | NR_147074.1 | n.1056+26572C>T | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
LINC01362 | ENST00000452901.5 | n.1056+26572C>T | intron_variant, non_coding_transcript_variant | 1 | |||||
LINC01362 | ENST00000659533.1 | n.605+26572C>T | intron_variant, non_coding_transcript_variant | ||||||
LINC01362 | ENST00000669455.1 | n.529+26572C>T | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes ? AF: 0.129 AC: 19650AN: 152052Hom.: 1440 Cov.: 32
GnomAD4 genome ? AF: 0.129 AC: 19675AN: 152170Hom.: 1447 Cov.: 32 AF XY: 0.131 AC XY: 9728AN XY: 74402
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at