rs1293161341
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 1P and 0B. PP2
The NM_001270.4(CHD1):c.5123G>A(p.Arg1708Gln) variant causes a missense change. The variant allele was found at a frequency of 0.00000413 in 1,454,384 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R1708W) has been classified as Uncertain significance.
Frequency
Consequence
NM_001270.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CHD1 | NM_001270.4 | c.5123G>A | p.Arg1708Gln | missense_variant | 36/36 | ENST00000614616.5 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CHD1 | ENST00000614616.5 | c.5123G>A | p.Arg1708Gln | missense_variant | 36/36 | 5 | NM_001270.4 | P2 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome AF: 0.00000413 AC: 6AN: 1454384Hom.: 0 Cov.: 30 AF XY: 0.00000692 AC XY: 5AN XY: 722212
GnomAD4 genome ? Cov.: 32
ClinVar
Submissions by phenotype
Pilarowski-Bjornsson syndrome Pathogenic:1
Pathogenic, no assertion criteria provided | literature only | OMIM | Jun 24, 2019 | - - |
not provided Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center | Jul 26, 2022 | PM2 PS4_Supporting, PP2 - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at