rs138479784
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_030786.3(SYNC):āc.540G>Cā(p.Gln180His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000143 in 1,399,508 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Synonymous variant affecting the same amino acid position (i.e. Q180Q) has been classified as Likely benign.
Frequency
Consequence
NM_030786.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SYNC | ENST00000409190.8 | c.540G>C | p.Gln180His | missense_variant | Exon 2 of 5 | 2 | NM_030786.3 | ENSP00000386439.3 | ||
SYNC | ENST00000373484.4 | c.540G>C | p.Gln180His | missense_variant | Exon 2 of 4 | 2 | ENSP00000362583.3 | |||
SYNC | ENST00000417633.1 | c.*7G>C | downstream_gene_variant | 4 | ENSP00000401975.1 | |||||
SYNC | ENST00000426909.1 | c.*65G>C | downstream_gene_variant | 4 | ENSP00000387594.1 |
Frequencies
GnomAD3 genomes Cov.: 28
GnomAD4 exome AF: 0.00000143 AC: 2AN: 1399508Hom.: 0 Cov.: 98 AF XY: 0.00000145 AC XY: 1AN XY: 690260
GnomAD4 genome Cov.: 28
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.