rs1387630
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000508512.5(ENSG00000250978):n.63+2690G>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000132 in 151,868 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000508512.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
LOC101928819 | XR_241808.5 | n.63+2690G>T | intron_variant | |||||
LOC101928819 | XR_948390.3 | n.85-4672G>T | intron_variant | |||||
LOC101928819 | XR_948391.3 | n.183-4672G>T | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
LINC02997 | ENST00000503106.5 | n.251+93097C>A | intron_variant | 4 | ||||||
ENSG00000250978 | ENST00000508512.5 | n.63+2690G>T | intron_variant | 3 | ||||||
ENSG00000250978 | ENST00000515184.1 | n.178+2690G>T | intron_variant | 3 | ||||||
LINC02997 | ENST00000668508.1 | n.123+14982C>A | intron_variant |
Frequencies
GnomAD3 genomes AF: 0.0000132 AC: 2AN: 151868Hom.: 0 Cov.: 29
GnomAD4 genome AF: 0.0000132 AC: 2AN: 151868Hom.: 0 Cov.: 29 AF XY: 0.0000135 AC XY: 1AN XY: 74146
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at