rs141686314
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_ModerateBP6_Very_StrongBS2
The NR_001566.3(TERC):n.228G>A variant causes a non coding transcript exon change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00141 in 729,688 control chromosomes in the GnomAD database, including 11 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NR_001566.3 non_coding_transcript_exon
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
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TERC | NR_001566.3 | n.228G>A | non_coding_transcript_exon_variant | Exon 1 of 1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00449 AC: 683AN: 152242Hom.: 9 Cov.: 33
GnomAD3 exomes AF: 0.00111 AC: 186AN: 168058Hom.: 1 AF XY: 0.000795 AC XY: 74AN XY: 93028
GnomAD4 exome AF: 0.000603 AC: 348AN: 577332Hom.: 2 Cov.: 0 AF XY: 0.000449 AC XY: 141AN XY: 314270
GnomAD4 genome AF: 0.00448 AC: 682AN: 152356Hom.: 9 Cov.: 33 AF XY: 0.00412 AC XY: 307AN XY: 74502
ClinVar
Submissions by phenotype
Dyskeratosis congenita, autosomal dominant 1 Pathogenic:1Benign:1
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not specified Benign:2
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
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not provided Benign:2
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Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 2;C4551974:Dyskeratosis congenita, autosomal dominant 1 Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at