rs143664462
Variant summary
Our verdict is Benign. Variant got -15 ACMG points: 1P and 16B. PP3BP4_StrongBP6_Very_StrongBS2
The NM_170682.4(P2RX2):c.211G>A(p.Glu71Lys) variant causes a missense change. The variant allele was found at a frequency of 0.00266 in 1,612,632 control chromosomes in the GnomAD database, including 12 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NM_170682.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -15 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00151 AC: 230AN: 152022Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00156 AC: 390AN: 249322Hom.: 0 AF XY: 0.00155 AC XY: 209AN XY: 135248
GnomAD4 exome AF: 0.00278 AC: 4057AN: 1460498Hom.: 12 Cov.: 33 AF XY: 0.00263 AC XY: 1914AN XY: 726634
GnomAD4 genome AF: 0.00151 AC: 230AN: 152134Hom.: 0 Cov.: 32 AF XY: 0.00136 AC XY: 101AN XY: 74376
ClinVar
Submissions by phenotype
not provided Benign:3
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P2RX2: BS1, BS2 -
not specified Benign:1
p.Glu71Lys in exon 2 of P2RX2: This variant is not expected to have clinical sig nificance because it has been identified in 0.3% (334/125162) of European chromo somes by the Genome Aggregation Database (gnomAD, http://gnomad.broadinstitute.o rg; dbSNP rs143664462). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at