rs144486582
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_006371.5(CRTAP):c.654C>A(p.Asn218Lys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000137 in 1,461,886 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Synonymous variant affecting the same amino acid position (i.e. N218N) has been classified as Likely benign.
Frequency
Consequence
NM_006371.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CRTAP | NM_006371.5 | c.654C>A | p.Asn218Lys | missense_variant | 3/7 | ENST00000320954.11 | |
CRTAP | NM_001393363.1 | c.654C>A | p.Asn218Lys | missense_variant | 3/6 | ||
CRTAP | NM_001393364.1 | c.654C>A | p.Asn218Lys | missense_variant | 3/6 | ||
CRTAP | NM_001393365.1 | c.504C>A | p.Asn168Lys | missense_variant | 2/6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CRTAP | ENST00000320954.11 | c.654C>A | p.Asn218Lys | missense_variant | 3/7 | 1 | NM_006371.5 | P1 | |
CRTAP | ENST00000449224.1 | c.654C>A | p.Asn218Lys | missense_variant | 3/6 | 2 | |||
CRTAP | ENST00000485310.1 | n.248C>A | non_coding_transcript_exon_variant | 3/5 | 4 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 0.00000137 AC: 2AN: 1461886Hom.: 0 Cov.: 31 AF XY: 0.00000275 AC XY: 2AN XY: 727244
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at