rs1463605
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The XR_931474.1(LOC105369715):n.314-17910G>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.164 in 152,058 control chromosomes in the GnomAD database, including 2,151 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
XR_931474.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC105369715 | XR_931474.1 | n.314-17910G>C | intron_variant, non_coding_transcript_variant | ||||
LOC105369715 | XR_001749060.1 | n.314-17910G>C | intron_variant, non_coding_transcript_variant | ||||
LOC105369715 | XR_001749061.1 | n.314-17910G>C | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|
Frequencies
GnomAD3 genomes ? AF: 0.164 AC: 24902AN: 151940Hom.: 2150 Cov.: 32
GnomAD4 genome ? AF: 0.164 AC: 24922AN: 152058Hom.: 2151 Cov.: 32 AF XY: 0.162 AC XY: 12048AN XY: 74336
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at