rs1555149372
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 3P and 1B. PM2PP2BP4
The NM_152641.4(ARID2):c.542C>G(p.Thr181Ser) variant causes a missense change. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. T181I) has been classified as Uncertain significance.
Frequency
Consequence
NM_152641.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ARID2 | NM_152641.4 | c.542C>G | p.Thr181Ser | missense_variant | 5/21 | ENST00000334344.11 | |
ARID2 | NM_001347839.2 | c.542C>G | p.Thr181Ser | missense_variant | 5/20 | ||
ARID2 | XM_047428489.1 | c.542C>G | p.Thr181Ser | missense_variant | 5/17 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ARID2 | ENST00000334344.11 | c.542C>G | p.Thr181Ser | missense_variant | 5/21 | 1 | NM_152641.4 | P1 | |
ARID2 | ENST00000422737.7 | c.542C>G | p.Thr181Ser | missense_variant | 5/20 | 1 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome ? Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.