rs17245715
Variant names:
Your query was ambiguous. Multiple possible variants found:
Variant summary
Our verdict is Likely benign. The variant received -2 ACMG points: 2P and 4B. PM2BP4_Strong
The variant allele was found at a frequency of 0.00000326 in 306,282 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: not found (cov: 33)
Exomes 𝑓: 0.0000033 ( 0 hom. )
Consequence
Unknown
Scores
2
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: -0.522
Publications
0 publications found
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ACMG classification
Our verdict: Likely_benign. The variant received -2 ACMG points.
PM2
Very rare variant in population databases, with high coverage;
BP4
Computational evidence support a benign effect (BayesDel_noAF=-0.67).
Variant Effect in Transcripts
RefSeq Transcripts
| Sel. | Gene | Transcript | Tags | HGVSc | HGVSp | Effect | Exon Rank | Protein | UniProt |
|---|---|---|---|---|---|---|---|---|---|
There are no transcript annotations for this variant. | |||||||||
Ensembl Transcripts
| Sel. | Gene | Transcript | Tags | HGVSc | HGVSp | Effect | Exon Rank | Protein | UniProt |
|---|---|---|---|---|---|---|---|---|---|
There are no transcript annotations for this variant. | |||||||||
Frequencies
GnomAD3 genomes
GnomAD3 genomes
Cov.:
33
GnomAD4 exome AF: 0.00000326 AC: 1AN: 306282Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 174476 show subpopulations
GnomAD4 exome
AF:
AC:
1
AN:
306282
Hom.:
AF XY:
AC XY:
0
AN XY:
174476
show subpopulations
African (AFR)
AF:
AC:
0
AN:
8756
American (AMR)
AF:
AC:
1
AN:
27452
Ashkenazi Jewish (ASJ)
AF:
AC:
0
AN:
10756
East Asian (EAS)
AF:
AC:
0
AN:
9406
South Asian (SAS)
AF:
AC:
0
AN:
59834
European-Finnish (FIN)
AF:
AC:
0
AN:
12970
Middle Eastern (MID)
AF:
AC:
0
AN:
2690
European-Non Finnish (NFE)
AF:
AC:
0
AN:
160096
Other (OTH)
AF:
AC:
0
AN:
14322
Allele Balance Distribution
Red line indicates average allele balance
Average allele balance: 0.525
Heterozygous variant carriers
0
0
1
1
2
2
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance
GnomAD4 genome
GnomAD4 genome
Cov.:
33
ClinVar
Not reported inComputational scores
Source:
Name
Calibrated prediction
Score
Prediction
BayesDel_noAF
Benign
DANN
Benign
PhyloP100
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
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