rs1799895
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_003102.4(SOD3):āc.691C>Gā(p.Arg231Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0154 in 1,431,336 control chromosomes in the GnomAD database, including 312 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Conflicting classifications of pathogenicity (no stars).
Frequency
Consequence
NM_003102.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0127 AC: 1931AN: 152106Hom.: 19 Cov.: 32
GnomAD3 exomes AF: 0.0225 AC: 1116AN: 49574Hom.: 20 AF XY: 0.0242 AC XY: 691AN XY: 28594
GnomAD4 exome AF: 0.0157 AC: 20136AN: 1279118Hom.: 292 Cov.: 35 AF XY: 0.0168 AC XY: 10556AN XY: 628084
GnomAD4 genome AF: 0.0127 AC: 1940AN: 152218Hom.: 20 Cov.: 32 AF XY: 0.0140 AC XY: 1043AN XY: 74420
ClinVar
Submissions by phenotype
Superoxide dismutase, elevated extracellular Pathogenic:1
- -
SOD3-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at