rs1886870
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000686875.1(ENSG00000230490):n.279-23202C>T variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000118 in 151,902 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
STARD13 | NM_001243476.3 | c.31-23202C>T | intron_variant | ||||
STARD13 | XM_017020835.3 | c.31-23202C>T | intron_variant | ||||
STARD13 | XM_024449429.2 | c.31-23202C>T | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000686875.1 | n.279-23202C>T | intron_variant, non_coding_transcript_variant | |||||||
ENST00000454681.2 | n.227-23202C>T | intron_variant, non_coding_transcript_variant | 5 |
Frequencies
GnomAD3 genomes ? AF: 0.000118 AC: 18AN: 151902Hom.: 0 Cov.: 31
GnomAD4 genome ? AF: 0.000118 AC: 18AN: 151902Hom.: 0 Cov.: 31 AF XY: 0.000108 AC XY: 8AN XY: 74162
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at