rs1900482
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000457975.2(ENSG00000236744):n.305+17657G>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.542 in 151,814 control chromosomes in the GnomAD database, including 22,774 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
PCDH15 | NM_001354404.2 | c.-155-181784G>A | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000457975.2 | n.305+17657G>A | intron_variant, non_coding_transcript_variant | 3 | ||||||
PCDH15 | ENST00000613346.4 | c.-155-181784G>A | intron_variant | 4 |
Frequencies
GnomAD3 genomes AF: 0.542 AC: 82173AN: 151696Hom.: 22738 Cov.: 32
GnomAD4 genome AF: 0.542 AC: 82270AN: 151814Hom.: 22774 Cov.: 32 AF XY: 0.538 AC XY: 39899AN XY: 74206
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at