rs199668753
Variant summary
Our verdict is Uncertain significance. Variant got 4 ACMG points: 4P and 0B. PM2PP3_Moderate
The NM_052928.3(SMYD4):c.2200G>T(p.Gly734Trp) variant causes a missense change. The variant allele was found at a frequency of 0.00000205 in 1,461,882 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_052928.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SMYD4 | NM_052928.3 | c.2200G>T | p.Gly734Trp | missense_variant | Exon 10 of 11 | ENST00000305513.12 | NP_443160.2 | |
SMYD4 | XM_024450560.2 | c.2200G>T | p.Gly734Trp | missense_variant | Exon 10 of 11 | XP_024306328.1 | ||
SMYD4 | XM_047435290.1 | c.2200G>T | p.Gly734Trp | missense_variant | Exon 10 of 10 | XP_047291246.1 | ||
SMYD4 | XM_047435291.1 | c.1888G>T | p.Gly630Trp | missense_variant | Exon 9 of 10 | XP_047291247.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SMYD4 | ENST00000305513.12 | c.2200G>T | p.Gly734Trp | missense_variant | Exon 10 of 11 | 1 | NM_052928.3 | ENSP00000304360.7 | ||
SMYD4 | ENST00000491788.1 | c.1612G>T | p.Gly538Trp | missense_variant | Exon 6 of 6 | 2 | ENSP00000460921.1 | |||
SMYD4 | ENST00000476292.1 | n.*14G>T | downstream_gene_variant | 2 |
Frequencies
GnomAD3 genomes Cov.: 30
GnomAD4 exome AF: 0.00000205 AC: 3AN: 1461882Hom.: 0 Cov.: 29 AF XY: 0.00000275 AC XY: 2AN XY: 727244
GnomAD4 genome Cov.: 30
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.