rs200063331
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001077416.2(TMEM231):c.248C>T(p.Ser83Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000282 in 1,417,486 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 9/13 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001077416.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TMEM231 | NM_001077418.3 | c.139+47C>T | intron_variant | Intron 1 of 6 | ENST00000258173.11 | NP_001070886.1 | ||
TMEM231 | NM_001077416.2 | c.248C>T | p.Ser83Leu | missense_variant | Exon 1 of 6 | NP_001070884.2 | ||
TMEM231 | NR_074083.2 | n.182+47C>T | intron_variant | Intron 1 of 6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TMEM231 | ENST00000568377.5 | c.176C>T | p.Ser59Leu | missense_variant | Exon 1 of 6 | 1 | ENSP00000476267.1 | |||
TMEM231 | ENST00000258173.11 | c.139+47C>T | intron_variant | Intron 1 of 6 | 1 | NM_001077418.3 | ENSP00000258173.5 | |||
TMEM231 | ENST00000565067.5 | c.139+47C>T | intron_variant | Intron 1 of 5 | 5 | ENSP00000457254.1 | ||||
TMEM231 | ENST00000562410.5 | n.139+47C>T | intron_variant | Intron 1 of 6 | 1 | ENSP00000454582.1 | ||||
TMEM231 | ENST00000570006.5 | n.139+47C>T | intron_variant | Intron 1 of 6 | 5 | ENSP00000455520.1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 0.00000282 AC: 4AN: 1417486Hom.: 0 Cov.: 30 AF XY: 0.00000143 AC XY: 1AN XY: 700782
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.