rs201302296
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001130679.3(EIF4E):c.415A>T(p.Met139Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000468 in 426,926 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/17 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001130679.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
EIF4E | NM_001968.5 | c.399+548A>T | intron_variant | Intron 5 of 6 | ENST00000450253.7 | NP_001959.1 | ||
EIF4E | NM_001130679.3 | c.415A>T | p.Met139Leu | missense_variant | Exon 6 of 8 | NP_001124151.1 | ||
EIF4E | NM_001331017.2 | c.483+548A>T | intron_variant | Intron 6 of 7 | NP_001317946.1 | |||
EIF4E | NM_001130678.4 | c.459+548A>T | intron_variant | Intron 5 of 6 | NP_001124150.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000659 AC: 1AN: 151656Hom.: 0 Cov.: 32
GnomAD4 exome AF: 0.00000363 AC: 1AN: 275152Hom.: 0 Cov.: 0 AF XY: 0.00000642 AC XY: 1AN XY: 155812
GnomAD4 genome AF: 0.00000659 AC: 1AN: 151774Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74166
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at