rs202018501
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_000149.4(FUT3):c.911G>T(p.Arg304Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000657 in 152,098 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_000149.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
FUT3 | NM_000149.4 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | NP_000140.1 | ||
FUT3 | NM_001097639.3 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | NP_001091108.3 | ||
FUT3 | NM_001097640.3 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | NP_001091109.3 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
FUT3 | ENST00000303225.12 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | 1 | ENSP00000305603.5 | |||
FUT3 | ENST00000458379.7 | c.911G>T | p.Arg304Leu | missense_variant | Exon 2 of 2 | 1 | ENSP00000416443.1 | |||
FUT3 | ENST00000589620.6 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | 1 | ENSP00000465804.1 | |||
FUT3 | ENST00000589918.5 | c.911G>T | p.Arg304Leu | missense_variant | Exon 3 of 3 | 1 | ENSP00000468123.1 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152098Hom.: 0 Cov.: 32
GnomAD4 exome Cov.: 34
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152098Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74296
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at