rs2074236321
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_017432.5(PTOV1):c.16C>A(p.Arg6Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000193 in 1,088,998 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_017432.5 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PTOV1 | NM_001305105.2 | c.16C>A | p.Arg6Ser | missense_variant | Exon 1 of 13 | NP_001292034.1 | ||
PTOV1 | NM_001394010.1 | c.16C>A | p.Arg6Ser | missense_variant | Exon 1 of 12 | NP_001380939.1 | ||
PTOV1 | NM_017432.5 | c.16C>A | p.Arg6Ser | missense_variant | Exon 1 of 13 | NP_059128.2 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000676 AC: 1AN: 147986Hom.: 0 Cov.: 31
GnomAD4 exome AF: 0.0000213 AC: 20AN: 941012Hom.: 0 Cov.: 32 AF XY: 0.0000226 AC XY: 10AN XY: 441610
GnomAD4 genome AF: 0.00000676 AC: 1AN: 147986Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 72118
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at