rs2077163
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP2
The ENST00000605930.3(ITPR3):āc.2163C>Gā(p.His721Gln) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000137 in 1,461,682 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Synonymous variant affecting the same amino acid position (i.e. H721H) has been classified as Benign.
Frequency
Consequence
ENST00000605930.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ITPR3 | NM_002224.4 | c.2163C>G | p.His721Gln | missense_variant | 18/58 | ENST00000605930.3 | NP_002215.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ITPR3 | ENST00000605930.3 | c.2163C>G | p.His721Gln | missense_variant | 18/58 | 1 | NM_002224.4 | ENSP00000475177 | P1 | |
ITPR3 | ENST00000374316.9 | c.2163C>G | p.His721Gln | missense_variant | 19/59 | 5 | ENSP00000363435 | P1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 0.00000137 AC: 2AN: 1461682Hom.: 0 Cov.: 54 AF XY: 0.00000138 AC XY: 1AN XY: 727146
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at