rs242326

Variant names:

• chr21-27455371-G-A
• rs242326

Your query was ambiguous. Multiple possible variants found:

• chr21-27455371-G-A
• chr21-27455371-G-C
• chr21-27455371-G-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.919 in 152,220 control chromosomes in the GnomAD database, including 64,332 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.92 (64332 hom., cov: 31)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 0.559

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.99).
• BA1: GnomAd4 highest subpopulation (NFE) allele frequency at 95% confidence interval = 0.918 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.919 AC: 139789 AN: 152102 Hom.: 64288 Cov.: 31

Gnomad AFR AF: 0.914

Gnomad AMI AF: 0.989

Gnomad AMR AF: 0.897

Gnomad ASJ AF: 0.852

Gnomad EAS AF: 0.904

Gnomad SAS AF: 0.911

Gnomad FIN AF: 0.967

Gnomad MID AF: 0.867

Gnomad NFE AF: 0.924

Gnomad OTH AF: 0.908

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.919 AC: 139893 AN: 152220 Hom.: 64332 Cov.: 31 AF XY: 0.920 AC XY: 68491 AN XY: 74428

Gnomad4 AFR AF: 0.914

Gnomad4 AMR AF: 0.897

Gnomad4 ASJ AF: 0.852

Gnomad4 EAS AF: 0.904

Gnomad4 SAS AF: 0.911

Gnomad4 FIN AF: 0.967

Gnomad4 NFE AF: 0.924

Gnomad4 OTH AF: 0.903

Alfa AF: 0.915 Hom.: 82424

Bravo AF: 0.914

Asia WGS AF: 0.888 AC: 3088 AN: 3474

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.99
CADD	Benign	3.5
DANN	Benign	0.64

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs242326; hg19: chr21-28827690;