rs2591714
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_174914.4(UGT3A2):c.1030G>A(p.Ala344Thr) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000434 in 1,614,192 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_174914.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
UGT3A2 | NM_174914.4 | c.1030G>A | p.Ala344Thr | missense_variant | 5/7 | ENST00000282507.8 | |
UGT3A2 | NM_001168316.2 | c.928G>A | p.Ala310Thr | missense_variant | 4/6 | ||
UGT3A2 | XM_011513988.2 | c.1111G>A | p.Ala371Thr | missense_variant | 6/8 | ||
UGT3A2 | NR_031764.2 | n.591G>A | non_coding_transcript_exon_variant | 4/6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
UGT3A2 | ENST00000282507.8 | c.1030G>A | p.Ala344Thr | missense_variant | 5/7 | 1 | NM_174914.4 | P1 | |
UGT3A2 | ENST00000513300.5 | c.928G>A | p.Ala310Thr | missense_variant | 4/6 | 2 | |||
UGT3A2 | ENST00000504685.5 | c.*135G>A | 3_prime_UTR_variant, NMD_transcript_variant | 4/6 | 2 |
Frequencies
GnomAD3 genomes ? AF: 0.00000657 AC: 1AN: 152192Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000159 AC: 4AN: 251488Hom.: 0 AF XY: 0.0000294 AC XY: 4AN XY: 135918
GnomAD4 exome AF: 0.00000410 AC: 6AN: 1461882Hom.: 0 Cov.: 31 AF XY: 0.00000688 AC XY: 5AN XY: 727244
GnomAD4 genome ? AF: 0.00000657 AC: 1AN: 152310Hom.: 0 Cov.: 32 AF XY: 0.0000134 AC XY: 1AN XY: 74476
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at