rs267738
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PP3_Moderate
The NM_022075.5(CERS2):c.344A>T(p.Glu115Val) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000994 in 1,609,368 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. E115A) has been classified as Likely benign.
Frequency
Consequence
NM_022075.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CERS2 | NM_022075.5 | c.344A>T | p.Glu115Val | missense_variant | 4/11 | ENST00000368954.10 | |
CERS2 | NM_181746.4 | c.344A>T | p.Glu115Val | missense_variant | 4/11 | ||
CERS2 | XM_011509451.3 | c.404A>T | p.Glu135Val | missense_variant | 4/11 | ||
CERS2 | XM_011509452.4 | c.344A>T | p.Glu115Val | missense_variant | 4/11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CERS2 | ENST00000368954.10 | c.344A>T | p.Glu115Val | missense_variant | 4/11 | 1 | NM_022075.5 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0000197 AC: 3AN: 152094Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00000404 AC: 1AN: 247474Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 134190
GnomAD4 exome AF: 0.00000892 AC: 13AN: 1457274Hom.: 0 Cov.: 35 AF XY: 0.00000689 AC XY: 5AN XY: 725234
GnomAD4 genome ? AF: 0.0000197 AC: 3AN: 152094Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74282
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at