rs2793108
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000658872.1(ENSG00000287564):n.323-15763C>T variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.522 in 151,878 control chromosomes in the GnomAD database, including 21,444 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC105376481 | XR_001747410.3 | n.2795-15763C>T | intron_variant, non_coding_transcript_variant | ||||
LOC105376481 | XR_001747409.3 | n.2795-15763C>T | intron_variant, non_coding_transcript_variant | ||||
LOC105376481 | XR_930796.3 | n.904-15763C>T | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000658872.1 | n.323-15763C>T | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.522 AC: 79148AN: 151760Hom.: 21426 Cov.: 31
GnomAD4 genome AF: 0.522 AC: 79210AN: 151878Hom.: 21444 Cov.: 31 AF XY: 0.528 AC XY: 39173AN XY: 74244
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at