rs2853533
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001071.4(TYMS):c.205+117G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000704 in 1,420,148 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001071.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TYMS | NM_001071.4 | c.205+117G>A | intron_variant | Intron 1 of 6 | ENST00000323274.15 | NP_001062.1 | ||
TYMS | NM_001354867.2 | c.205+117G>A | intron_variant | Intron 1 of 5 | NP_001341796.1 | |||
TYMS | NM_001354868.2 | c.205+117G>A | intron_variant | Intron 1 of 4 | NP_001341797.1 | |||
TYMSOS | NR_171001.1 | n.228C>T | non_coding_transcript_exon_variant | Exon 1 of 2 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD4 exome AF: 7.04e-7 AC: 1AN: 1420148Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 703438
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.