rs28933680
Variant summary
Our verdict is Pathogenic. Variant got 11 ACMG points: 11P and 0B. PM1PM2PM5PP3_StrongPP5
The NM_000132.4(F8):c.5618C>T(p.Pro1873Leu) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000166 in 1,208,078 control chromosomes in the GnomAD database, with no homozygous occurrence. There are no hemizygote samples in GnomAD. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in Lovd as Likely pathogenic (no stars). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. P1873R) has been classified as Pathogenic.
Frequency
Consequence
NM_000132.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Pathogenic. Variant got 11 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
F8 | NM_000132.4 | c.5618C>T | p.Pro1873Leu | missense_variant | 17/26 | ENST00000360256.9 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
F8 | ENST00000360256.9 | c.5618C>T | p.Pro1873Leu | missense_variant | 17/26 | 1 | NM_000132.4 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.00000901 AC: 1AN: 110974Hom.: 0 Cov.: 22 AF XY: 0.00 AC XY: 0AN XY: 33204
GnomAD4 exome AF: 9.11e-7 AC: 1AN: 1097104Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 362506
GnomAD4 genome ? AF: 0.00000901 AC: 1AN: 110974Hom.: 0 Cov.: 22 AF XY: 0.00 AC XY: 0AN XY: 33204
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at