rs2908004
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_057168.2(WNT16):c.244G>A(p.Gly82Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.455 in 1,612,998 control chromosomes in the GnomAD database, including 175,541 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_057168.2 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.545 AC: 82808AN: 151990Hom.: 25383 Cov.: 33
GnomAD3 exomes AF: 0.445 AC: 111106AN: 249930Hom.: 26983 AF XY: 0.438 AC XY: 59328AN XY: 135334
GnomAD4 exome AF: 0.445 AC: 650229AN: 1460890Hom.: 150102 Cov.: 71 AF XY: 0.444 AC XY: 322349AN XY: 726822
GnomAD4 genome AF: 0.545 AC: 82920AN: 152108Hom.: 25439 Cov.: 33 AF XY: 0.534 AC XY: 39715AN XY: 74350
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at