rs3091244
Variant names:
Your query was ambiguous. Multiple possible variants found:
Variant summary
Our verdict is Benign. The variant received -12 ACMG points: 0P and 12B. BP4_StrongBA1
The variant allele was found at a frequency of 0.3 in 151,984 control chromosomes in the GnomAD database, including 7,034 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: 𝑓 0.30 ( 7034 hom., cov: 30)
Consequence
Unknown
Scores
2
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: -1.68
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ACMG classification
Our verdict: Benign. The variant received -12 ACMG points.
BP4
Computational evidence support a benign effect (BayesDel_noAF=-1.01).
BA1
GnomAd4 highest subpopulation (AMR) allele frequency at 95% confidence interval = 0.311 is higher than 0.05.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
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Frequencies
GnomAD3 genomes AF: 0.300 AC: 45553AN: 151866Hom.: 7036 Cov.: 30 show subpopulations
GnomAD3 genomes
AF:
AC:
45553
AN:
151866
Hom.:
Cov.:
30
Gnomad AFR
AF:
Gnomad AMI
AF:
Gnomad AMR
AF:
Gnomad ASJ
AF:
Gnomad EAS
AF:
Gnomad SAS
AF:
Gnomad FIN
AF:
Gnomad MID
AF:
Gnomad NFE
AF:
Gnomad OTH
AF:
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome AF: 0.300 AC: 45581AN: 151984Hom.: 7034 Cov.: 30 AF XY: 0.299 AC XY: 22217AN XY: 74276 show subpopulations
GnomAD4 genome
AF:
AC:
45581
AN:
151984
Hom.:
Cov.:
30
AF XY:
AC XY:
22217
AN XY:
74276
Gnomad4 AFR
AF:
AC:
0.290727
AN:
0.290727
Gnomad4 AMR
AF:
AC:
0.318955
AN:
0.318955
Gnomad4 ASJ
AF:
AC:
0.305187
AN:
0.305187
Gnomad4 EAS
AF:
AC:
0.0615534
AN:
0.0615534
Gnomad4 SAS
AF:
AC:
0.245538
AN:
0.245538
Gnomad4 FIN
AF:
AC:
0.354585
AN:
0.354585
Gnomad4 NFE
AF:
AC:
0.3142
AN:
0.3142
Gnomad4 OTH
AF:
AC:
0.291864
AN:
0.291864
Heterozygous variant carriers
0
1590
3180
4770
6360
7950
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance
Genome Het
Genome Hom
Variant carriers
0
456
912
1368
1824
2280
<30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75
75-80
>80
Age
Alfa
AF:
Hom.:
ClinVar
Not reported inComputational scores
Source:
Name
Calibrated prediction
Score
Prediction
BayesDel_noAF
Benign
DANN
Benign
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at