rs3097342
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NR_138096.1(ZNF473CR):n.606+492A>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000403 in 148,762 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NR_138096.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ZNF473CR | NR_138096.1 | n.606+492A>C | intron_variant, non_coding_transcript_variant | ||||
ZNF473CR | NR_027257.2 | n.606+492A>C | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ZNF473CR | ENST00000527209.1 | n.606+492A>C | intron_variant, non_coding_transcript_variant | 2 | |||||
ZNF473 | ENST00000601364.5 | c.227-1504A>C | intron_variant | 3 |
Frequencies
GnomAD3 genomes ? AF: 0.0000403 AC: 6AN: 148762Hom.: 0 Cov.: 30
GnomAD4 genome ? AF: 0.0000403 AC: 6AN: 148762Hom.: 0 Cov.: 30 AF XY: 0.0000688 AC XY: 5AN XY: 72696
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at